6LC1 Dna Binding Protein Dna date Nov 16, 2019
title Structural Basis Of Nr4a1 Bound To The Human Pituitary Proopiomelanocortin Gene Promoter
authors L.Jiang, Y.Chen
compound source
Molecule: Dna
Chain: I, F
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Receptor Subfamily 4 Group A Member 1
Chain: J, A, D, G
Synonym: Early Response Protein Nak1,Nuclear Hormone Recept Nur77,Orphan Nuclear Receptor Hmr,Orphan Nuclear Receptor T Testicular Receptor 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a1, Gfrp1, Hmr, Nak1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (25-Mer)
Chain: L, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.209 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.822 63.210 91.762 109.98 90.21 89.54
method X-Ray Diffractionresolution 3.12 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (6lc1.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (6lc1.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 6LC1
  • CSU: Contacts of Structural Units for 6LC1
  • Structure Factors (340 Kb)
  • Retrieve 6LC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LC1 from S2C, [Save to disk]
    • View 6LC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LC1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lc1_L] [6lc1_D] [6lc1_F] [6lc1_C] [6lc1_I] [6lc1_A] [6lc1_G] [6lc1_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LC1
  • Community annotation for 6LC1 at PDBWiki (http://pdbwiki.org)

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