6LIV Lyase date Dec 13, 2019
title Crystal Structure Of Tyrosine Decarboxylase In Complex With
authors H.Wang, J.Yu, M.Yao
compound source
Molecule: Tyrosinedopa Decarboxylase 2
Chain: A, B, C, D, E, F
Ec: 4.1.1.28,4.1.1.25
Engineered: Yes
 Organism_scientific: Papaver Somniferum
Organism_common: Opium Poppy
Organism_taxid: 3469
Gene: Tydc2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.227 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.911 180.414 218.057 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand GOL, LLP enzyme Lyase E.C.4.1.1.28 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]
  • Biological Unit Coordinates (6liv.pdb1.gz) 168 Kb
  • Biological Unit Coordinates (6liv.pdb2.gz) 167 Kb
  • Biological Unit Coordinates (6liv.pdb3.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 6LIV
  • CSU: Contacts of Structural Units for 6LIV
  • Structure Factors (5548 Kb)
  • Retrieve 6LIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LIV from S2C, [Save to disk]
    • View 6LIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6liv_F] [6liv_E] [6liv_A] [6liv_C] [6liv_D] [6liv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LIV
  • Community annotation for 6LIV at PDBWiki (http://pdbwiki.org)

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