6LT0 Protein Binding date Jan 21, 2020
title Cryo-Em Structure Of C9orf72-Smcr8-Wdr41
authors D.Tang, J.Sheng, L.Xu, X.Zhan, C.Yan, S.Qi
compound source
Molecule: Wd Repeat-Containing Protein 41
Chain: A, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr41, Mstp048
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide Exchange Protein Smcr8
Chain: B, E
Synonym: Smith-Magenis Syndrome Chromosomal Region Candidat Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smcr8
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Guanine Nucleotide Exchange C9orf72
Chain: C, F
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C9orf72
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


F, C


Primary referenceCryo-EM structure of C9ORF72-SMCR8-WDR41 reveals the role as a GAP for Rab8a and Rab11a., Tang D, Sheng J, Xu L, Zhan X, Liu J, Jiang H, Shu X, Liu X, Zhang T, Jiang L, Zhou C, Li W, Cheng W, Li Z, Wang K, Lu K, Yan C, Qi S, Proc Natl Acad Sci U S A. 2020 Apr 17. pii: 2002110117. doi:, 10.1073/pnas.2002110117. PMID:32303654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (6lt0.pdb1.gz) 316 Kb
  • CSU: Contacts of Structural Units for 6LT0
  • Retrieve 6LT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LT0 from S2C, [Save to disk]
    • View 6LT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LT0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lt0_E] [6lt0_A] [6lt0_B] [6lt0_D] [6lt0_F] [6lt0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LT0
  • Community annotation for 6LT0 at PDBWiki (http://pdbwiki.org)

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