6LTH	Gene Regulation	date	Jan 22, 2020
title	Structure Of Human Baf Base Module
authors	S.He, Z.Wu, Y.Tian, Z.Yu, J.Yu, X.Wang, J.Li, B.Liu, Y.Xu
compound		source
Molecule: Transcription Activator Brg1 Chain: I Synonym: Atp-Dependent Helicase Smarca4,Brg1-Associated Fac Baf190a,Mitotic Growth And Transcription Activator,Protein Protein Brahma Homolog 1,Snf2-Beta,Swisnf-Related Matrix-A Actin-Dependent Regulator Of Chromatin Subfamily A Member 4 Ec: 3.6.4.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarca4 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: At-Rich Interactive Domain-Containing Protein 1a Chain: L Synonym: Arid Domain-Containing Protein 1a Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Arid1a Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily B Member 1; Chain: M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarcb1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Swisnf Complex Subunit Smarcc2 Chain: N, O Synonym: Brg1-Associated Factor 170,Baf170,Swisnf Complex Subunit,Swisnf-Related Matrix-Associated Actin-Dependent R Of Chromatin Subfamily C Member 2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarcc2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily D Member 1; Chain: P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarcd1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily E Member 1; Chain: Q Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smarce1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Zinc Finger Protein Ubi-D4 Chain: R Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpf2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.00 Å
ligand	ZN	enzyme	Hydrolase E.C.3.6.4 BRENDA
Gene Ontology	Chain Function Process Component I RNA polymerase I CORE elemen... npBAF complex L M RNA polymerase I CORE elemen... O, N P Q transcription coactivator ac... R

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk] Biological Unit Coordinates (6lth.pdb1.gz) 273 Kb LPC: Ligand-Protein Contacts for 6LTH CSU: Contacts of Structural Units for 6LTH Retrieve 6LTH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6LTH from S2C, [Save to disk]

View 6LTH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6LTH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6lth_L] [6lth_P] [6lth_N] [6lth_Q] [6lth_M] [6lth_I] [6lth_R] [6lth_O] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6LTH

Community annotation for 6LTH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---