6LTH Gene Regulation date Jan 22, 2020
title Structure Of Human Baf Base Module
authors H.Shuang, W.Zihan, T.Yuan, Y.Zishuo, Y.Jiali, W.Xinxin, L.Jie, L.Bi X.Yanhui
compound source
Molecule: Transcription Activator Brg1
Chain: I
Synonym: Atp-Dependent Helicase Smarca4,Brg1-Associated Fac Baf190a,Mitotic Growth And Transcription Activator,Protein Protein Brahma Homolog 1,Snf2-Beta,Swisnf-Related Matrix-A Actin-Dependent Regulator Of Chromatin Subfamily A Member 4
Ec: 3.6.4.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarca4
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: At-Rich Interactive Domain-Containing Protein 1a
Chain: L
Synonym: Arid Domain-Containing Protein 1a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arid1a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily B Member 1;
Chain: M
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcb1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf Complex Subunit Smarcc2
Chain: N, O
Synonym: Brg1-Associated Factor 170,Baf170,Swisnf Complex Subunit,Swisnf-Related Matrix-Associated Actin-Dependent R Of Chromatin Subfamily C Member 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcc2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily D Member 1;
Chain: P
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcd1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily E Member 1;
Chain: Q
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarce1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t

Molecule: Zinc Finger Protein Ubi-D4
Chain: R
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpf2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
I
  • RNA polymerase I CORE elemen...

  • npBAF complex
    • L


    M
  • RNA polymerase I CORE elemen...


    • O, N


    P


    Q
  • transcription coactivator ac...


    • R


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (6lth.pdb1.gz) 277 Kb
  • CSU: Contacts of Structural Units for 6LTH
  • Retrieve 6LTH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6LTH from S2C, [Save to disk]
    • View 6LTH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6LTH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6lth from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6lth_L] [6lth_P] [6lth_N] [6lth_Q] [6lth_M] [6lth_I] [6lth_R] [6lth_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6LTH
  • Community annotation for 6LTH at PDBWiki (http://pdbwiki.org)

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