6M8S Signaling Protein date Aug 22, 2018
title Crystal Structure Of The Kctd12 H1 Domain In Complex With Gb Subunits
authors S.Zheng, A.C.Kruse
compound source
Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: C, D, G, H, K
Synonym: Transducin Beta Chain 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: I, J, L, E, F
Synonym: G Gamma-I
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9

Molecule: Btbpoz Domain-Containing Protein Kctd12
Chain: A, O, P, B, M
Fragment: Unp Residues 200-325
Synonym: Pfetin,Predominantly Fetal Expressed T1 Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kctd12, C13orf2, Kiaa1778, Pfet1
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 21 21 21
R_factor 0.251 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.090 121.990 206.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.71 Å
Gene
Ontology
ChainFunctionProcessComponent
F, J, E, I, L


K, H, C, D, G
  • G-protein coupled acetylchol...

  • Primary referenceStructural basis for KCTD-mediated rapid desensitization of GABAB signalling., Zheng S, Abreu N, Levitz J, Kruse AC, Nature. 2019 Mar;567(7746):127-131. doi: 10.1038/s41586-019-0990-0. Epub 2019 Feb, 27. PMID:30814734
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (386 Kb) [Save to disk]
  • Biological Unit Coordinates (6m8s.pdb1.gz) 379 Kb
  • CSU: Contacts of Structural Units for 6M8S
  • Structure Factors (617 Kb)
  • Retrieve 6M8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M8S from S2C, [Save to disk]
  • View 6M8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M8S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m8s_O] [6m8s_F] [6m8s_D] [6m8s_B] [6m8s_K] [6m8s_I] [6m8s_H] [6m8s_G] [6m8s_M] [6m8s_E] [6m8s_P] [6m8s_A] [6m8s_L] [6m8s_C] [6m8s_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M8S
  • Community annotation for 6M8S at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science