6M92 Ligase date Aug 22, 2018
title Monophosphorylated Pser33 B-Catenin Peptide, B-Trcpskp1, Nr Ternary Complex
authors K.R.Simonetta, M.C.Clifton, R.L.Walter, G.M.Ranieri, J.J.Carter,
compound source
Molecule: F-Boxwd Repeat-Containing Protein 1a
Chain: A
Synonym: E3rsikappab,Epididymis Tissue Protein Li 2a,F-Box Repeats Protein Beta-Trcp,Pikappabalpha-E3 Receptor Subunit
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btrc, Btrcp, Fbw1a, Fbxw1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: S-Phase Kinase-Associated Protein 1
Chain: B
Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Catenin Beta-1
Chain: C
Synonym: Beta-Catenin
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.189 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.590 82.590 111.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand J8V, PO4, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceProspective discovery of small molecule enhancers of an E3 ligase-substrate interaction., Simonetta KR, Taygerly J, Boyle K, Basham SE, Padovani C, Lou Y, Cummins TJ, Yung SL, von Soly SK, Kayser F, Kuriyan J, Rape M, Cardozo M, Gallop MA, Bence NF, Barsanti PA, Saha A, Nat Commun. 2019 Mar 29;10(1):1402. doi: 10.1038/s41467-019-09358-9. PMID:30926793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (6m92.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 6M92
  • CSU: Contacts of Structural Units for 6M92
  • Structure Factors (375 Kb)
  • Retrieve 6M92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M92 from S2C, [Save to disk]
  • View 6M92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m92_C] [6m92_B] [6m92_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M92
  • Community annotation for 6M92 at PDBWiki (http://pdbwiki.org)

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