6ME5 Membrane Protein date Sep 05, 2018
title Xfel Crystal Structure Of Human Melatonin Receptor Mt1 In Co Agomelatine
authors B.Stauch, L.C.Johansson, J.D.Mccorvy, N.Patel, G.W.Han, C.Gati, A. A.Ishchenko, W.Brehm, T.A.White, N.Michaelian, C.Madsen, L.Zhu, T J.M.Grandner, R.H.J.Olsen, A.R.Tribo, U.Weierstall, B.L.Roth, V. W.Liu, V.Cherezov
compound source
Molecule: Chimera Protein Of Melatonin Receptor Type 1a And Glycogen Synthase;
Chain: A
Synonym: Mel1a Receptor,Glycogen Synthase,Mel1a Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens, Pyrococcus Abyssi Ge5
Organism_common: Human
Organism_taxid: 9606, 272844
Strain: Ge5 Orsay
Gene: Mtnr1a, Pab2292
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 4 21 2
R_factor 0.232 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.200 122.200 122.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand AWY, OLA, YCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of ligand recognition at the human MT1 melatonin receptor., Stauch B, Johansson LC, McCorvy JD, Patel N, Han GW, Huang XP, Gati C, Batyuk A, Slocum ST, Ishchenko A, Brehm W, White TA, Michaelian N, Madsen C, Zhu L, Grant TD, Grandner JM, Shiriaeva A, Olsen RHJ, Tribo AR, Yous S, Stevens RC, Weierstall U, Katritch V, Roth BL, Liu W, Cherezov V, Nature. 2019 May;569(7755):284-288. doi: 10.1038/s41586-019-1141-3. Epub 2019 Apr, 24. PMID:31019306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (6me5.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 6ME5
  • CSU: Contacts of Structural Units for 6ME5
  • Structure Factors (505 Kb)
  • Retrieve 6ME5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ME5 from S2C, [Save to disk]
  • View 6ME5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ME5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6me5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ME5
  • Community annotation for 6ME5 at PDBWiki (http://pdbwiki.org)

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