6ME9 Membrane Protein date Sep 05, 2018
title Xfel Crystal Structure Of Human Melatonin Receptor Mt2 In Co Ramelteon
authors L.C.Johansson, B.Stauch, J.Mccorvy, G.W.Han, N.Patel, A.Batyuk, C. C.Li, J.Grandner, S.Hao, R.H.J.Olsen, A.R.Tribo, S.Zaare, L.Zhu, N.A.Zatsepin, U.Weierstall, W.Liu, B.L.Roth, V.Katritch, V.Chere
compound source
Molecule: Soluble Cytochrome B562,Melatonin Receptor Type 1 Rubredoxin;
Chain: A, B
Synonym: Cytochrome B-562,Mel1b Receptor,Rd,Mel1b Receptor
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli, Homo Sapiens, Clostr Pasteurianum;
Organism_common: Human
Organism_taxid: 562, 9606, 1501
Gene: Cybc, Mtnr1b
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.248 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.400 145.700 77.200 90.00 106.20 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand JEV, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceXFEL structures of the human MT2 melatonin receptor reveal the basis of subtype selectivity., Johansson LC, Stauch B, McCorvy JD, Han GW, Patel N, Huang XP, Batyuk A, Gati C, Slocum ST, Li C, Grandner JM, Hao S, Olsen RHJ, Tribo AR, Zaare S, Zhu L, Zatsepin NA, Weierstall U, Yous S, Stevens RC, Liu W, Roth BL, Katritch V, Cherezov V, Nature. 2019 May;569(7755):289-292. doi: 10.1038/s41586-019-1144-0. Epub 2019 Apr, 24. PMID:31019305
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (6me9.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (6me9.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6ME9
  • CSU: Contacts of Structural Units for 6ME9
  • Structure Factors (755 Kb)
  • Retrieve 6ME9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ME9 from S2C, [Save to disk]
    • View 6ME9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ME9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6me9_A] [6me9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ME9
  • Community annotation for 6ME9 at PDBWiki (http://pdbwiki.org)

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