6MST Protein Fibril date Oct 18, 2018
title Cryo-Em Structure Of Human Aa Amyloid Fibril
authors S.Loerch, M.Rennegarbe, F.Liberta, N.Grigorieff, M.Fandrich, M.Sc
compound source
Molecule: Serum Amyloid A-1 Protein
Chain: A, B, C, E, D, F, H, I, J, K, L, G
Synonym: Saa
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (6mst.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 6MST
  • Retrieve 6MST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MST from S2C, [Save to disk]
    • View 6MST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MST
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mst_J] [6mst_I] [6mst_C] [6mst_G] [6mst_H] [6mst_B] [6mst_K] [6mst_A] [6mst_F] [6mst_L] [6mst_D] [6mst_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MST
  • Community annotation for 6MST at PDBWiki (http://pdbwiki.org)

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