6MVD Transferase Transferase Inhibitor date Oct 25, 2018
title Crystal Structure Of Lecithin:Cholesterol Acyltransferase (L Complex With Isopropyl Dodec-11-Enylfluorophosphonate (Idfp Small Molecule Activator
authors K.A.Manthei, L.Chang, J.J.G.Tesmer
compound source
Molecule: Phosphatidylcholine-Sterol Acyltransferase
Chain: A, B
Synonym: Lecithin-Cholesterol Acyltransferase,Phospholipid- Cholesterol Acyltransferase;
Ec: 2.3.1.43
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lcat
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.697 106.377 117.823 90.00 125.45 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand H94, H9A, NAG, NI, SO4 enzyme Transferase E.C.2.3.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular basis for activation of lecithin:cholesterol acyltransferase by a compound that increases HDL cholesterol., Manthei KA, Yang SM, Baljinnyam B, Chang L, Glukhova A, Yuan W, Freeman LA, Maloney DJ, Schwendeman A, Remaley AT, Jadhav A, Tesmer JJ, Elife. 2018 Nov 27;7. pii: 41604. doi: 10.7554/eLife.41604. PMID:30479275
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (6mvd.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (6mvd.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6MVD
  • CSU: Contacts of Structural Units for 6MVD
  • Structure Factors (706 Kb)
  • Retrieve 6MVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MVD from S2C, [Save to disk]
    • View 6MVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6MVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mvd_A] [6mvd_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6MVD
  • Community annotation for 6MVD at PDBWiki (http://pdbwiki.org)

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