6NE4 Biosynthetic Protein Signaling Protein date Dec 16, 2018
title Designed Repeat Protein Specifically In Complex With Fz7crd
authors Y.Miao, K.M.Jude, K.C.Garcia
compound source
Molecule: Designed Repeat Binding Protein
Chain: B
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Frizzled-7
Chain: A
Synonym: Hfz7,Fze3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fzd7
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 2 21 21
R_factor 0.160 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.604 68.367 86.468 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceReceptor subtype discrimination using extensive shape complementary designed interfaces., Dang LT, Miao Y, Ha A, Yuki K, Park K, Janda CY, Jude KM, Mohan K, Ha N, Vallon M, Yuan J, Vilches-Moure JG, Kuo CJ, Garcia KC, Baker D, Nat Struct Mol Biol. 2019 May 13. pii: 10.1038/s41594-019-0224-z. doi:, 10.1038/s41594-019-0224-z. PMID:31086346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (6ne4.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 6NE4
  • CSU: Contacts of Structural Units for 6NE4
  • Structure Factors (997 Kb)
  • Retrieve 6NE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NE4 from S2C, [Save to disk]
  • View 6NE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NE4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ne4_B] [6ne4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NE4
  • Community annotation for 6NE4 at PDBWiki (http://pdbwiki.org)

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