6NID Protein Binding Peptide date Dec 27, 2018
title Crystal Structure Of A Human Calciumcalmodulin Dependent Se Protein Kinase (Cask) Pdz Domain In Complex With Neurexin-1
authors Y.J.Sun, L.Gakhar, E.J.Fuentes
compound source
Molecule: Peripheral Plasma Membrane Protein Cask
Chain: A, B, C
Synonym: Hcask,Calciumcalmodulin-Dependent Serine Protein Protein Lin-2 Homolog;
Ec: 2.7.11.1
Engineered: Yes
Other_details: M 485 Expression Artifact G 486 Expression A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cask, Lin2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Neurexin-1
Chain: D, E, F
Synonym: Neurexin I-Alpha,Neurexin-1-Alpha
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.328 51.177 72.412 90.00 97.72 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand EDO enzyme Transferase E.C.2.7.11.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (6nid.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (6nid.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (6nid.pdb3.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 6NID
  • CSU: Contacts of Structural Units for 6NID
  • Structure Factors (841 Kb)
  • Retrieve 6NID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NID from S2C, [Save to disk]
  • View 6NID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NID
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nid_B] [6nid_D] [6nid_F] [6nid_A] [6nid_C] [6nid_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NID
  • Community annotation for 6NID at PDBWiki (http://pdbwiki.org)

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