6NIG	Immune System Agonist	date	Dec 27, 2018
title	Crystal Structure Of The Human Tlr2-Diprovocim Complex
authors	H.Zhang, B.A.Beutler, D.R.Tomchick, L.Su
compound		source
Molecule: Toll-Like Receptor 2,Variable Lymphocyte Receptor Chain: A, B, C, D Fragment: Tlr (Unp Residues 1-507) + Linker + Vlr (Unp Resi 248); Synonym: Tollinterleukin-1 Receptor-Like Protein 4 Engineered: Yes		Organism_scientific: Homo Sapiens, Eptatretus Stoutii Organism_common: Human, Pacific Hagfish Organism_taxid: 9606, 7765 Gene: Tlr2, Til4, Vlrb Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 1 21 1	R_factor 0.210 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.098 201.252 109.359 90.00 94.26 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	KQD, NAG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Basis of TLR2/TLR1 Activation by the Synthetic Agonist Diprovocim., Su L, Wang Y, Wang J, Mifune Y, Morin MD, Jones BT, Moresco EMY, Boger DL, Beutler B, Zhang H, J Med Chem. 2019 Mar 28;62(6):2938-2949. doi: 10.1021/acs.jmedchem.8b01583. Epub , 2019 Mar 13. PMID:30829478

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (811 Kb) [Save to disk] Biological Unit Coordinates (6nig.pdb1.gz) 455 Kb Biological Unit Coordinates (6nig.pdb2.gz) 347 Kb LPC: Ligand-Protein Contacts for 6NIG CSU: Contacts of Structural Units for 6NIG Structure Factors (4083 Kb) Retrieve 6NIG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NIG from S2C, [Save to disk]

View 6NIG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6NIG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6nig_C] [6nig_B] [6nig_D] [6nig_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6NIG

Community annotation for 6NIG at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---