6NLP Transport Protein date Jan 08, 2019
title The Crystal Structure Of An Abc Transporter Periplasmic Bind Protein Ydcs From Escherichia Coli Bw25113
authors K.Tan, T.Skarina, R.Di Leo, A.Savchenko, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Bacterial Extracellular Solute-Binding Family Pro
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli 1-392-07_s4_c3
Organism_taxid: 1444275
Gene: Ad40_1746
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg53
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.895 42.896 122.771 90.00 121.96 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand EDO, IMD, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (6nlp.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (6nlp.pdb2.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 6NLP
  • CSU: Contacts of Structural Units for 6NLP
  • Structure Factors (1905 Kb)
  • Retrieve 6NLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NLP from S2C, [Save to disk]
    • View 6NLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nlp_A] [6nlp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NLP
  • Community annotation for 6NLP at PDBWiki (http://pdbwiki.org)

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