6NLY Ligase date Jan 09, 2019
title Fragment Of Human Mitochondrial Alanyl-Trna Synthetase C-Ala
authors B.Kuhle, P.Schimmel
compound source
Molecule: Alanine--Trna Ligase, Mitochondrial
Chain: B, A, C, D
Fragment: C-Terminal Domain (Unp Residues 802-985)
Synonym: Alanyl-Trna Synthetase, Alars
Ec: 6.1.1.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aars2, Aarsl, Kiaa1270
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.220 317.230 54.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand
enzyme Ligase E.C.6.1.1.7 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (6nly.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (6nly.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (6nly.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (6nly.pdb4.gz) 59 Kb
  • CSU: Contacts of Structural Units for 6NLY
  • Structure Factors (341 Kb)
  • Retrieve 6NLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NLY from S2C, [Save to disk]
    • View 6NLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NLY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nly_A] [6nly_D] [6nly_C] [6nly_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NLY
  • Community annotation for 6NLY at PDBWiki (http://pdbwiki.org)

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