6NMI Transcription date Jan 10, 2019
title Cryo-Em Structure Of The Human Tfiih Core Complex
authors B.J.Greber, D.Toso, J.Fang, E.Nogales
compound source
Molecule: General Transcription And Dna Repair Factor Iih H Subunit Xpb;
Chain: A
Ec: 3.6.4.12
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription And Dna Repair Factor Iih H Subunit Xpd;
Chain: B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 1, P62
Chain: C
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 4, P52
Chain: D
Synonym: Basic Transcription Factor 2 52 Kda Subunit, Btf2 General Transcription Factor Iih Polypeptide 4, Tfiih Basal Transcription Factor Complex P52 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 2, P44
Chain: E
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 3, P34
Chain: F
Synonym: P34, Basic Transcription Factor 2 34 Kda Subunit, General Transcription Factor Iih Polypeptide 3, Tfiih Basal Transcription Factor Complex P34 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: General Transcription Factor Iih Subunit 5, P8
Chain: G
Synonym: General Transcription Factor Iih Polypeptide 5, Tf Ortholog, Tfiih Basal Transcription Factor Complex Ttd-A Su
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Cdk-Activating Kinase Assembly Factor Mat1
Chain: H
Synonym: Cdk7cyclin-H Assembly Factor,Cyclin-G1-Interactin Menage A Trois,Ring Finger Protein 66,Ring Finger Protein M P36
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand SF4, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D
  • ATPase activator activity


    • E


    F


    G


    H


    Primary referenceThe complete structure of the human TFIIH core complex., Greber BJ, Toso DB, Fang J, Nogales E, Elife. 2019 Mar 12;8. pii: 44771. doi: 10.7554/eLife.44771. PMID:30860024
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk]
  • Biological Unit Coordinates (6nmi.pdb1.gz) 442 Kb
  • LPC: Ligand-Protein Contacts for 6NMI
  • CSU: Contacts of Structural Units for 6NMI
  • Retrieve 6NMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NMI from S2C, [Save to disk]
    • View 6NMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nmi_H] [6nmi_B] [6nmi_F] [6nmi_D] [6nmi_G] [6nmi_C] [6nmi_A] [6nmi_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NMI
  • Community annotation for 6NMI at PDBWiki (http://pdbwiki.org)

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