6NN6 | Gene Regulation | date | Jan 14, 2019 |
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title | Structure Of Dot1l-H2bk120ub Nucleosome Complex | ||||||||||||||||||||||||||
authors | C.J.Anderson, M.R.Baird, A.Hsu, E.H.Barbour, Y.Koyama, M.J.Borgni R.K.Mcginty | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Histone H3.2 Chain: A, E Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||
Molecule: Histone H4 Chain: B, F Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||
Molecule: Histone H2a Type 1 Chain: C, G Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||
Molecule: Histone H2b 1.1 Chain: D, H Synonym: H2b1.1 Engineered: Yes Mutation: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||
Molecule: Dna (145-Mer) Chain: I Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Widom 601 Nucleosome Positioning Sequence | ||||||||||||||||||||||||||
Molecule: Dna (145-Mer) Chain: J Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Widom 601 Nucleosome Positioning Sequence | ||||||||||||||||||||||||||
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79 Chain: K Synonym: Dot1-Like Protein,Histone H3-K79 Methyltransferase Hmtase,Lysine N-Methyltransferase 4; Ec: 2.1.1.43 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dot1l, Kiaa1814, Kmt4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst50 | ||||||||||||||||||||||||||
Molecule: Ubiquitin Chain: L Engineered: Yes Mutation: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst50 | ||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.90 Å | ||||||||||||||||||||||||
ligand | enzyme | Transferase E.C.2.1.1.43 BRENDA | |||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Structural Basis for Recognition of Ubiquitylated Nucleosome by Dot1L Methyltransferase., Anderson CJ, Baird MR, Hsu A, Barbour EH, Koyama Y, Borgnia MJ, McGinty RK, Cell Rep. 2019 Feb 12;26(7):1681-1690.e5. doi: 10.1016/j.celrep.2019.01.058. PMID:30759380 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |