6NPY Immune System date Jan 18, 2019
title Cryo-Em Structure Of Nlrp3 Bound To Nek7
authors H.Sharif, L.Wang, W.L.Wang, H.Wu
compound source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 3
Chain: A
Synonym: Angiotensinvasopressin Receptor Aiiavp-Like,Cate Protein 1.1,Clr1.1,Cold-Induced Autoinflammatory Syndrome 1 Cryopyrin,Pyrin-Containing Apaf1-Like Protein 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlrp3, C1orf7, Cias1, Nalp3, Pypaf1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Protein Kinase R,Serinethreonine-Protein Kinase
Chain: B
Synonym: Eukaryotic Translation Initiation Factor 2-Alpha K Eif-2a Protein Kinase 2,Interferon-Inducible Rna-Dependent Kinase,P1eif-2a Protein Kinase,Protein Kinase Rna-Activate Kinase R,Tyrosine-Protein Kinase Eif2ak2,P68 Kinase,Never I A-Related Kinase 7,Nima-Related Protein Kinase 7;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif2ak2, Pkr, Prkr, Nek7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand ADP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (6npy.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 6NPY
  • CSU: Contacts of Structural Units for 6NPY
  • Retrieve 6NPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NPY from S2C, [Save to disk]
    • View 6NPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NPY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6npy_A] [6npy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NPY
  • Community annotation for 6NPY at PDBWiki (http://pdbwiki.org)

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