6NQ3 Transcription date Jan 19, 2019
title Crystal Structure Of A Suz12-Rbbp4-Phf19-Jarid2 Heterotetram Complex
authors S.Chen, L.Jiao, X.Liu
compound source
Molecule: Histone-Binding Protein Rbbp4
Chain: A, E
Synonym: Chromatin Assembly Factor 1 Subunit C,Caf-1 Subuni Chromatin Assembly Factor I P48 Subunit,Caf-I P48,Nucleosom Remodeling Factor Subunit Rbap48,Retinoblastoma-Binding Pro Rbbp-4,Retinoblastoma-Binding Protein P48;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp4, Rbap48
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Polycomb Protein Suz12
Chain: B, F
Synonym: Chromatin Precipitated E2f Target 9 Protein,Chet 9 Joined To Jazf1 Protein,Suppressor Of Zeste 12 Protein Homo
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Suz12, Chet9, Jjaz1, Kiaa0160
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Phd Finger Protein 19
Chain: C, G
Synonym: Polycomb-Like Protein 3,Hpcl3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf19, Pcl3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Jumonji
Chain: D, H
Synonym: Jumonjiarid Domain-Containing Protein 2
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.170 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.710 139.600 268.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.89 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (508 Kb) [Save to disk]
  • Biological Unit Coordinates (6nq3.pdb1.gz) 498 Kb
  • Biological Unit Coordinates (6nq3.pdb2.gz) 499 Kb
  • LPC: Ligand-Protein Contacts for 6NQ3
  • CSU: Contacts of Structural Units for 6NQ3
  • Structure Factors (1606 Kb)
  • Retrieve 6NQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NQ3 from S2C, [Save to disk]
  • View 6NQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NQ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nq3_A] [6nq3_C] [6nq3_D] [6nq3_F] [6nq3_B] [6nq3_E] [6nq3_G] [6nq3_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NQ3
  • Community annotation for 6NQ3 at PDBWiki (http://pdbwiki.org)

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