6NQB Ribosome date Jan 20, 2019
title Role Of Era In Assembly And Homeostasis Of The Ribosomal Sma
authors J.Ortega
compound source
Molecule: 30s Ribosomal Protein S3
Chain: C
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsc, Nctc9094_00425
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S10
Chain: J
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsj, Hmpref9552_00980
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S14
Chain: N
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsn, C0r28_24180, D9j44_12955, Ers085374_04715, Samea3485113_04711;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S19
Chain: S
Engineered: Yes
Organism_scientific: Escherichia Coli H736
Organism_taxid: 656414
Gene: Rpss, Echg_03182
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 16s Ribosomal Rna
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S4
Chain: D
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsd, A1um_03988
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S5
Chain: E
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpse, Aox65_22485
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S6
Chain: F
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsf, B9m99_08080, Be963_12515, Bmt53_12235, Cij94_19 D2188_21030, Dtm45_20815, Du321_10545, Eco118ui_24760, Econih1_24970, Efv14_11625, Eia08_19855, Hmpref3040_03088, Nctc9077_05624;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S8
Chain: H
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsh, Hmpref9530_00381
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S12
Chain: L
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsl, Ec970259_3994
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S15
Chain: O
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein Bs16
Chain: P
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S17
Chain: Q
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S18
Chain: R
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsr, Hmpref9534_03906
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S20
Chain: T
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpst, G749_00187
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S2
Chain: B
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsb, Hmpref1620_04659
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


H


J


L


N


O
  • mRNA binding involved in pos...


    • P
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


    • Q


    R


    S


    T
  • ornithine decarboxylase inhi...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (738 Kb) [Save to disk]
  • Biological Unit Coordinates (6nqb.pdb1.gz) 731 Kb
  • LPC: Ligand-Protein Contacts for 6NQB
  • CSU: Contacts of Structural Units for 6NQB
  • Retrieve 6NQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NQB from S2C, [Save to disk]
    • View 6NQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6NQB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nqb_A] [6nqb_J] [6nqb_F] [6nqb_O] [6nqb_D] [6nqb_H] [6nqb_P] [6nqb_N] [6nqb_S] [6nqb_Q] [6nqb_B] [6nqb_C] [6nqb_L] [6nqb_R] [6nqb_T] [6nqb_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6NQB
  • Community annotation for 6NQB at PDBWiki (http://pdbwiki.org)

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