6NRY Immune System date Jan 24, 2019
title Crystal Structure Of Human Caspase-4
authors J.Yang, Z.Liu, W.Shi, T.S.Xiao
compound source
Molecule: Caspase-4
Chain: A
Synonym: Casp-4,Ice And Ced-3 Homolog 2,Ich-2,Ice(Rel)-II,M Protease Tx;
Ec: 3.4.22.57
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp4, Ich2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.687 163.383 103.661 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand GOL enzyme Hydrolase E.C.3.4.22.57 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (6nry.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 6NRY
  • CSU: Contacts of Structural Units for 6NRY
  • Structure Factors (476 Kb)
  • Retrieve 6NRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NRY from S2C, [Save to disk]
  • View 6NRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NRY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NRY
  • Community annotation for 6NRY at PDBWiki (http://pdbwiki.org)

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