6NYP Immune System Viral Protein date Feb 11, 2019
title Crystal Structure Of Ul144btla Complex
authors B.Aruna, D.M.Zajonc, T.Doukov
compound source
Molecule: B- And T-Lymphocyte Attenuator
Chain: A, B, C, D
Synonym: B- And T-Lymphocyte-Associated Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btla
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ul144
Chain: E, F, G, H
Engineered: Yes

Organism_scientific: Macacine Herpesvirus 1
Organism_taxid: 10325
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.230 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.990 77.200 101.720 90.00 91.67 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand GOL, NA, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of human cytomegalovirus UL144, an HVEM orthologue, bound to the B and T cell Lymphocyte Attenuator., Bitra A, Nemcovicova I, Picarda G, Doukov T, Wang J, Benedict CA, Zajonc DM, J Biol Chem. 2019 May 24. pii: RA119.009199. doi: 10.1074/jbc.RA119.009199. PMID:31126984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (6nyp.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (6nyp.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (6nyp.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (6nyp.pdb4.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6NYP
  • CSU: Contacts of Structural Units for 6NYP
  • Structure Factors (779 Kb)
  • Retrieve 6NYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NYP from S2C, [Save to disk]
  • View 6NYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NYP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nyp_E] [6nyp_A] [6nyp_G] [6nyp_H] [6nyp_D] [6nyp_C] [6nyp_F] [6nyp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NYP
  • Community annotation for 6NYP at PDBWiki (http://pdbwiki.org)

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