6O0Y Hydrolase Rna Dna date Feb 17, 2019
title Conformational States Of Cas9-Sgrna-Dna Ternary Complex In T Presence Of Magnesium
authors X.Zhu, R.Clarke, A.K.Puppala, S.Chittori, A.Merk, B.J.Merrill, M.S S.Subramaniam
compound source
Molecule: Crispr-Associated Endonuclease Cas9csn1
Chain: A
Synonym: Spcas9,Spycas9
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Gene: Cas9, Csn1, Spy_1046
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Single Guide Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5' Product Of Target Strand Dna
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Non-Target Strand Dna
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 3' Product Of Target Strand Dna
Chain: c
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.37 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (6o0y.pdb1.gz) 208 Kb
  • CSU: Contacts of Structural Units for 6O0Y
  • Retrieve 6O0Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O0Y from S2C, [Save to disk]
    • View 6O0Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O0Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o0y_D] [6o0y_B] [6o0y_C] [6o0y_A] [6o0y_c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O0Y
  • Community annotation for 6O0Y at PDBWiki (http://pdbwiki.org)

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