6O0Z Hydrolase Rna Dna date Feb 17, 2019
title Conformational States Of Cas9-Sgrna-Dna Ternary Complex In T Presence Of Magnesium
authors X.Zhu, R.Clarke, A.K.Puppala, S.Chittori, A.Merk, B.J.Merrill, M.S S.Subramaniam
compound source
Molecule: Crispr-Associated Endonuclease Cas9csn1
Chain: A
Synonym: Spcas9,Spycas9
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Gene: Cas9, Csn1, Spy_1046
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Single Guide Rna
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Target Strand Dna
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Non-Target Strand Dna
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (6o0z.pdb1.gz) 214 Kb
  • CSU: Contacts of Structural Units for 6O0Z
  • Retrieve 6O0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O0Z from S2C, [Save to disk]
  • View 6O0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O0Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6o0z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o0z_C] [6o0z_D] [6o0z_B] [6o0z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O0Z
  • Community annotation for 6O0Z at PDBWiki (http://pdbwiki.org)

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