6O60 Transferase date Mar 04, 2019
title Crystal Structure Of Ggtase3-Fbxl2-Skp1 Complex
authors H.Wang, N.Zheng
compound source
Molecule: Protein Prenyltransferase Alpha Subunit Repeat-Co Protein 1;
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptar1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Geranylgeranyl Transferase Type-2 Subunit Beta
Chain: B
Synonym: Geranylgeranyl Transferase Type II Subunit Beta,Gg Beta,Rab Geranyl-Geranyltransferase Subunit Beta,Rab Ggtase Geranylgeranyltransferase Subunit Beta,Type II Protein Gera Geranyltransferase Subunit Beta;
Ec: 2.5.1.60
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rabggtb, Ggtb
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: F-Boxlrr-Repeat Protein 2
Chain: C
Synonym: F-Box And Leucine-Rich Repeat Protein 2,F-Box Prot Fbl2fbl3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fbxl2, Fbl2, Fbl3
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: S-Phase Kinase-Associated Protein 1
Chain: D
Synonym: Cyclin-Acdk2-Associated Protein P19,P19a,Organ Of Protein 2,Ocp-2,Organ Of Corti Protein II,Ocp-II,Rna Polyme Elongation Factor-Like Protein,Siii,Transcription Elongatio Polypeptide 1-Like,P19skp1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Skp1, Emc19, Ocp2, Skp1a, Tceb1l
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.843 99.318 151.202 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.5.1.60 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (388 Kb) [Save to disk]
  • Biological Unit Coordinates (6o60.pdb1.gz) 381 Kb
  • CSU: Contacts of Structural Units for 6O60
  • Structure Factors (1156 Kb)
  • Retrieve 6O60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O60 from S2C, [Save to disk]
  • View 6O60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6O60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6o60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o60_D] [6o60_B] [6o60_C] [6o60_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6O60
  • Community annotation for 6O60 at PDBWiki (http://pdbwiki.org)

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