6O8G Dna Binding Protein Dna date Mar 10, 2019
title Crystal Structure Of Uvrb Bound To Fully Duplex Dna
authors S.J.Lee, R.J.Sung, G.L.Verdine
compound source
Molecule: Uvrabc System Protein B
Chain: A, B, C
Synonym: Protein Uvrb,Excinuclease Abc Subunit B
Engineered: Yes
 Organism_scientific: Bacillus Caldotenax
Organism_taxid: 1395
Gene: Uvrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Tpcptpcpcpaptpcpgpcpgpcptp 3');
Chain: D, F, H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gpgptpapgpcpgpcpgpaptpgpgp 3');
Chain: E, G, I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.220 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.685 201.181 62.664 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand ADP, CL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (6o8g.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (6o8g.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (6o8g.pdb3.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 6O8G
  • CSU: Contacts of Structural Units for 6O8G
  • Structure Factors (1879 Kb)
  • Retrieve 6O8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O8G from S2C, [Save to disk]
    • View 6O8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O8G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o8g_H] [6o8g_A] [6o8g_E] [6o8g_B] [6o8g_G] [6o8g_F] [6o8g_I] [6o8g_D] [6o8g_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O8G
  • Community annotation for 6O8G at PDBWiki (http://pdbwiki.org)

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