6O9M Transcription date Mar 14, 2019
title Structure Of The Human Apo Tfiih
authors C.L.Yan, T.Dodd, Y.He, J.A.Tainer, S.E.Tsutakawa, I.Ivanov
compound source
Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit;
Chain
Synonym: Basic Transcription Factor 2 80 Kda Subunit, Btf2 Dna Excision Repair Protein Ercc-2, Dna Repair Protein Comp Xp-D Cells, Tfiih Basal Transcription Factor Complex 80 Kda Tfiih P80, Xeroderma Pigmentosum Group D-Complementing Prot
Ec: 3.6.4.12
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 1
Chain: 1
Synonym: Basic Transcription Factor 2 62 Kda Subunit,Btf2 P Transcription Factor Iih Polypeptide 1,Tfiih Basal Transcri Factor Complex P62 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 4, P52
Chain: 2
Synonym: Basic Transcription Factor 2 52 Kda Subunit, Btf2 General Transcription Factor Iih Polypeptide 4, Tfiih Basal Transcription Factor Complex P52 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Cdk-Activating Kinase Assembly Factor Mat1
Chain: 3
Synonym: Cdk7cyclin-H Assembly Factor,Cyclin-G1-Interactin Menage A Trois,Ring Finger Protein 66,Ring Finger Protein M P36;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 3
Chain: 4
Synonym: P34, Basic Transcription Factor 2 44 Kda Subunit, General Transcription Factor Iih Polypeptide 2, Tfiih Basal Transcription Factor Complex P44 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 5
Chain: 5
Synonym: General Transcription Factor Iih Polypeptide 5, Tf Ortholog, Tfiih Basal Transcription Factor Complex Ttd-A Su
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 2
Chain: 6
Synonym: Basic Transcription Factor 2 44 Kda Subunit, Btf2 General Transcription Factor Iih Polypeptide 2, Tfiih Basal Transcription Factor Complex P44 Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit;
Chain: 7
Synonym: Basic Transcription Factor 2 89 Kda Subunit, Btf2 Excision Repair Protein Ercc-3, Dna Repair Protein Compleme Cells, Tfiih Basal Transcription Factor Complex 89 Kda Subu P89, Xeroderma Pigmentosum Group B-Complementing Protein;
Ec: 3.6.4.12
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand SF4, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
0


1


2
  • ATPase activator activity


    • 3


    4


    5


    6


    7


    Primary referenceTranscription preinitiation complex structure and dynamics provide insight into genetic diseases., Yan C, Dodd T, He Y, Tainer JA, Tsutakawa SE, Ivanov I, Nat Struct Mol Biol. 2019 May 20. pii: 10.1038/s41594-019-0220-3. doi:, 10.1038/s41594-019-0220-3. PMID:31110295
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (6o9m.pdb1.gz) 435 Kb
  • LPC: Ligand-Protein Contacts for 6O9M
  • CSU: Contacts of Structural Units for 6O9M
  • Retrieve 6O9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6O9M from S2C, [Save to disk]
    • View 6O9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6O9M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6o9m_7] [6o9m_5] [6o9m_1] [6o9m_6] [6o9m_3] [6o9m_0] [6o9m_4] [6o9m_2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6O9M
  • Community annotation for 6O9M at PDBWiki (http://pdbwiki.org)

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