6OB0 Hydrolase Protein Binding date Mar 19, 2019
title Compound 2 Bound Structure Of Wt Lipoprotein Lipase In Compl Gpihbp1 Mutant N78d N82d Produced In Hek293-F Cells
authors R.Arora, P.A.Horton, T.E.Benson, M.J.Romanowski
compound source
Molecule: Lipoprotein Lipase
Chain: A, B, C, D
Synonym: Lpl
Ec: 3.1.1.34
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpihbp1, Hbp1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-F

Molecule: Glycosylphosphatidylinositol-Anchored High Densit Lipoprotein-Binding Protein 1;
Chain: E, F, G, H
Fragment: Residues 21-151
Synonym: Gpi-Anchored Hdl-Binding Protein 1,High Density Li Binding Protein 1;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpihbp1, Hbp1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293-F
symmetry Space Group: P 21 21 2
R_factor 0.198 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.430 191.420 97.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand
enzyme Hydrolase E.C.3.1.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • lipoprotein lipase activity
  • positive regulation of seque...
  • positive regulation of chemo...

  • Primary referenceStructure of lipoprotein lipase in complex with GPIHBP1., Arora R, Nimonkar AV, Baird D, Wang C, Chiu CH, Horton PA, Hanrahan S, Cubbon R, Weldon S, Tschantz WR, Mueller S, Brunner R, Lehr P, Meier P, Ottl J, Voznesensky A, Pandey P, Smith TM, Stojanovic A, Flyer A, Benson TE, Romanowski MJ, Trauger JW, Proc Natl Acad Sci U S A. 2019 May 21;116(21):10360-10365. doi:, 10.1073/pnas.1820171116. Epub 2019 May 9. PMID:31072929
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (6ob0.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6ob0.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (6ob0.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (6ob0.pdb4.gz) 90 Kb
  • CSU: Contacts of Structural Units for 6OB0
  • Structure Factors (1181 Kb)
  • Retrieve 6OB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OB0 from S2C, [Save to disk]
  • View 6OB0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OB0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ob0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ob0_D] [6ob0_C] [6ob0_F] [6ob0_A] [6ob0_E] [6ob0_H] [6ob0_B] [6ob0_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OB0
  • Community annotation for 6OB0 at PDBWiki (http://pdbwiki.org)

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