6OEA Dna Binding Protein Dna date Mar 27, 2019
title Crystal Structure Of Hmces Srap Domain In Complex With Longe Overhang Dna
authors L.Halabelian, M.Ravichandran, Y.Li, H.Zeng, C.Bountra, A.M.Edward C.H.Arrowsmith, Structural Genomics Consortium (Sgc)
compound source
Molecule: Embryonic Stem Cell-Specific 5-Hydroxymethylcytos Binding Protein;
Chain: A
Fragment: Srap Domain (Unp Residues 2-270)
Synonym: Es Cell-Specific 5hmc-Binding Protein,Putative Pep Srapd1,Srap Domain-Containing Protein 1;
Ec: 3.4.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmces, C3orf37, Dc12, Srapd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpcpapgpapcpgptptpgptpt)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Gptpcptpgpg)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: I 1 2 1
R_factor 0.208 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.863 52.060 148.309 90.00 93.11 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, UNX enzyme Hydrolase E.C.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6oea.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 6OEA
  • CSU: Contacts of Structural Units for 6OEA
  • Structure Factors (1061 Kb)
  • Retrieve 6OEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OEA from S2C, [Save to disk]
    • View 6OEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6OEA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oea_A] [6oea_C] [6oea_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6OEA
  • Community annotation for 6OEA at PDBWiki (http://pdbwiki.org)

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