6OQR Membrane Protein date Apr 29, 2019
title E. Coli Atp Synthase Adp State 1a
authors A.G.Stewart, J.L.Walshe, M.Sobti
compound source
Molecule: Atp Synthase Subunit Delta
Chain: W
Synonym: Atp Synthase F(1) Sector Subunit Delta,F-Type Atpa Delta,F-Atpase Subunit Delta;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atph, Ab67_4411
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit Alpha
Chain: C, B, A
Synonym: Atp Synthase F1 Sector Subunit Alpha,F-Atpase Subu
Ec: 7.1.2.2
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpa, Ad31_4476
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit B
Chain: X, Y
Synonym: Atp Synthase F(0) Sector Subunit B,Atpase Subunit Atpase Subunit B,F-Atpase Subunit B;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpf, Ecdg_04362
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Epsilon Chain
Chain: H
Synonym: Atp Synthase F1 Sector Epsilon Subunit,F-Atpase Ep Subunit;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpc, A1ws_04460
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Gamma Chain
Chain: G
Synonym: Atp Synthase F1 Sector Gamma Subunit,F-Atpase Gamm
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpg, Bn16_43751
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit Beta
Chain: F, E, D
Synonym: Atp Synthase F1 Sector Subunit Beta,F-Atpase Subun
Ec: 7.1.2.2
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpd, Wlh_03015
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit C
Chain: J, L, M, N, O, P, Q, R, I, S
Synonym: Atp Synthase F(0) Sector Subunit C,F-Type Atpase S F-Atpase Subunit C,Lipid-Binding Protein;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpe, Ecjg_03465
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit A
Chain: a
Synonym: Atp Synthase F0 Sector Subunit A,F-Atpase Subunit
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Atpb, A6581_09625, A8c65_04635, A8g17_13205, A9819_21 Ac789_1c41260, Acn002_3840, Acn77_20010, Acn81_06510, Acu57 Acu90_00315, Akg99_01200, Am464_11965, Amk83_17435, Aml07_0 Aml35_23925, Apz14_19970, Au473_02230, Auq13_19445, Aus26_0 Aw059_18665, Aw106_23235, B1k96_28785, B7c53_19560, Banra_0 Banra_03128, Banra_03214, Banra_04536, Banra_04611, Bb545_2 Bhf46_03220, Bhs81_22305, Biz41_19310, Bk292_20055, Bk400_0 Bmt53_14990, Bmt91_10650, Bn17_36921, Btq04_25560, Btq06_19 Bue81_18230, Bvl39_06790, Bw690_12705, Bwp17_17405, Bzl31_2 C2u48_14255, C4j69_12205, C5n07_23075, C5p01_14375, C5p43_1 C5p44_14015, C6669_08960, C7235_25075, C7b02_15545, C7b06_1 C7b07_18555, Ca593_07300, Cg691_14695, Cg692_21460, Cg705_1 Cg706_05505, Cod30_14545, Cod46_05110, Cr538_25535, Cr539_0 Crd98_06365, Cre06_22220, Crm83_19985, Cv83915_02325, Cvh05 Cws33_22485, D0x26_21590, D2f89_18645, D3821_26125, D3i61_2 D6z21_17295, D7k63_14130, D8k42_12760, D9d20_15080, D9d23_1 D9d65_17115, D9d69_04800, D9d77_23770, D9e35_19420, D9f57_0 D9g42_23250, D9h12_19550, D9h53_20710, D9h66_14770, D9h68_1 D9h70_07975, D9h84_13135, D9i18_08055, D9i52_22315, D9i93_1 D9j11_15870, D9j44_15620, D9j48_14640, D9k10_12565, Div22_1 Dl800_26315, Dl925_10465, Dlu27_05670, Dm262_10125, Dmi41_0 Dnq45_04220, Dot75_06920, Dp258_23940, Dp277_10610, Dqf57_1 Ds732_00235, Dtl43_15450, Dtl90_16085, Dv750_19840, E2855_0 Eai42_11905, Eai44_10320, Eai52_06435, Eb510_22250, Eb553_2 Eb569_11805, Eb595_21530, Ec1094v2_4559, Ec3234a_68c00800, Ec95nr1_03180, Ecs4680, Ed060_20795, Ed098_20360, Ed124_204 Ed133_14365, Ed287_08070, Ed600_20035, Ed648_17305, Ed653_1 Ed658_09750, Ed944_14625, Eep03_14120, Eep23_14845, Ef364_2 Efv06_19295, Eia21_14165, El75_4432, El79_4683, El80_4591, Ers085374_04660, Ers085379_02386, Ers085383_02615, Ers08538 Ers085404_04407, Ers150876_04315, Forc28_6046, Gj11_23870, Hw43_00205, Jd73_04915, Nctc10090_03054, Nctc10418_07533, Nctc10429_00459, Nctc10444_05020, Nctc11022_03985, Nctc1112 Nctc11181_02279, Nctc13125_03147, Nctc13127_06463, Nctc1346 Nctc7152_05030, Nctc8179_05398, Nctc8622_01220, Nctc8960_02 Nctc9036_04909, Nctc9037_05079, Nctc9045_05855, Nctc9054_05 Nctc9055_01929, Nctc9058_01885, Nctc9062_03146, Nctc9073_06 Nctc9111_05225, Nctc9117_06282, Nctc9119_05322, Nctc9701_05 Nctc9703_04488, Nctc9706_02267, Nctc9969_05235, Pu06_21025, Rg28_23995, Rk56_018685, Rx35_03591, Samea3472044_00548, Samea3472047_02992, Samea3472055_04839, Samea3472056_03685, Samea3472067_04030, Samea3472070_05212, Samea3472080_03392, Samea3472108_02423, Samea3472114_05011, Samea3472147_03706, Samea3484427_03569, Samea3484429_03570, Samea3484433_04143, Samea3485101_04107, Samea3752557_01245, Samea3752559_04742, Samea3753064_05400, Samea3753097_00985, Samea3753290_05396, Samea3753300_04372, Samea3753397_02464, Sk85_04068, Un86_05 Un91_09915, Wq89_11300, Wr15_16550;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.10 Å
ligand ADP, ATP, MG, PO4 enzyme E.C.7.1.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, A, B


F, E, D


G


H


S, N, Q, M, L, J, O, P, I, R


W


Y, X


a


Primary referenceCryo-EM structures provide insight into how E. coli F1Fo ATP synthase accommodates symmetry mismatch., Sobti M, Walshe JL, Wu D, Ishmukhametov R, Zeng YC, Robinson CV, Berry RM, Stewart AG, Nat Commun. 2020 May 26;11(1):2615. doi: 10.1038/s41467-020-16387-2. PMID:32457314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (676 Kb) [Save to disk]
  • Biological Unit Coordinates (6oqr.pdb1.gz) 667 Kb
  • LPC: Ligand-Protein Contacts for 6OQR
  • CSU: Contacts of Structural Units for 6OQR
  • Retrieve 6OQR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OQR from S2C, [Save to disk]
  • View 6OQR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OQR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6oqr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oqr_W] [6oqr_S] [6oqr_C] [6oqr_Y] [6oqr_J] [6oqr_R] [6oqr_F] [6oqr_P] [6oqr_B] [6oqr_D] [6oqr_N] [6oqr_X] [6oqr_M] [6oqr_L] [6oqr_H] [6oqr_O] [6oqr_G] [6oqr_E] [6oqr_a] [6oqr_I] [6oqr_A] [6oqr_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OQR
  • Community annotation for 6OQR at PDBWiki (http://pdbwiki.org)

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