6OXL	Endocytosis	date	May 13, 2019
title	Cryo-Em Structure Of Phosphorylated Ap-2 (Mu E302k) Bound To The Presence Of Ss Dna
authors	E.A.Partlow, R.W.Baker, G.M.Beacham, J.Chappie, A.E.Leschziner, G.Hollopeter
compound		source
Molecule: Ap-2 Complex Subunit Alpha-2 Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap2a2, Adtab Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pacyc_duet
Molecule: Ap-2 Complex Subunit Beta Chain: B Synonym: Ap105b,Adaptor Protein Complex Ap-2 Subunit Beta,A Related Protein Complex 2 Subunit Beta,Beta-2-Adaptin,Beta- Clathrin Assembly Protein Complex 2 Beta Large Chain,Plasma Adaptor Ha2ap2 Adaptin Beta Subunit; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap2b1, Clapb1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet_duet
Molecule: Ap-2 Complex Subunit Mu Chain: M Synonym: Ap-2 Mu Chain,Adaptor Protein Complex Ap-2 Subunit Adaptor-Related Protein Complex 2 Subunit Mu,Clathrin Assem Protein Complex 2 Mu Medium Chain,Clathrin Coat Assembly Pr Ap50,Clathrin Coat-Associated Protein Ap50,Mu2-Adaptin,Plas Membrane Adaptor Ap-2 50 Kda Protein; Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap2m1, Clapm1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet_duet
Molecule: Ap-2 Complex Subunit Sigma Chain: S Synonym: Adaptor Protein Complex Ap-2 Subunit Sigma,Adaptor Protein Complex 2 Subunit Sigma,Clathrin Assembly Protein 2 Small Chain,Clathrin Coat Assembly Protein Ap17,Clathrin Co Associated Protein Ap17,Plasma Membrane Adaptor Ap-2 17 Kda Sigma-Adaptin 3b,Sigma2-Adaptin; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Ap2s1, Ap17, Claps2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pacyc_duet
Molecule: Adaptin Ear-Binding Coat-Associated Protein 2 Chain: N Synonym: Necap Endocytosis-Associated Protein 2,Necap-2 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Necap2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21b
Molecule: Unknown Region Of Adaptin Ear-Binding Coat-Associ Protein 2 Ex-Domain; Chain: n Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21-B
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.50 Å
ligand	TPO	enzyme
Gene Ontology	Chain Function Process Component A B M synaptic vesicle endocytosis... postsynaptic neurotransmitte... N S

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk] Biological Unit Coordinates (6oxl.pdb1.gz) 291 Kb LPC: Ligand-Protein Contacts for 6OXL CSU: Contacts of Structural Units for 6OXL Retrieve 6OXL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6OXL from S2C, [Save to disk]

View 6OXL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6OXL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6oxl_n] [6oxl_B] [6oxl_N] [6oxl_S] [6oxl_M] [6oxl_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6OXL

Community annotation for 6OXL at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---