6P4F	Hydrolase Dna	date	May 27, 2019
title	Crystal Structure Of The Xpb-Bax1-Forked Dna Ternary Complex
authors	F.He, E.Hilario, L.Fan
compound		source
Molecule: Dna-Dependent Atpase Xpbii Chain: A, C Engineered: Yes Mutation: Yes		Organism_scientific: Sulfurisphaera Tokodaii (Strain Dsm 16 10545 Nbrc 100140 7); Organism_taxid: 273063 Strain: Dsm 16993 Jcm 10545 Nbrc 100140 7 Gene: Xpb2, St1613, Stk_16130 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Rosetta(De3)Plys-S Expression_system_plasmid: Pet-28a
Molecule: Endonuclease Bax1 Chain: B, D Engineered: Yes		Organism_scientific: Sulfurisphaera Tokodaii (Strain Dsm 16 10545 Nbrc 100140 7); Organism_taxid: 273063 Strain: Dsm 16993 Jcm 10545 Nbrc 100140 7 Gene: Bax1, St1614, Stk_16140 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_variant: Rosetta(De3)Plys-S Expression_system_plasmid: Pet-15b
Molecule: Dna (5'- D(Tptpgpapcptpcpapapcpaptpcpcptptptpgpcp Apa)-3'); Chain: E, G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'- D(Ptpgptpapgpgptptptpcpcpaptpgptptpgpapg -3'); Chain: F, H Engineered: Yes Other_details: Ttgtaggtttccatgttgagtca		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 1 2 1	R_factor 0.250 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 214.687 92.150 172.128 90.00 132.24 90.00
method	X-Ray Diffraction	resolution	3.55 Å
ligand	CL, MG, PO4	enzyme
Gene Ontology	Chain Function Process Component A, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (601 Kb) [Save to disk] Biological Unit Coordinates (6p4f.pdb1.gz) 297 Kb Biological Unit Coordinates (6p4f.pdb2.gz) 298 Kb LPC: Ligand-Protein Contacts for 6P4F CSU: Contacts of Structural Units for 6P4F Structure Factors (844 Kb) Retrieve 6P4F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6P4F from S2C, [Save to disk]

View 6P4F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6P4F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6p4f_E] [6p4f_A] [6p4f_C] [6p4f_D] [6p4f_F] [6p4f_H] [6p4f_B] [6p4f_G] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6P4F

Community annotation for 6P4F at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---