6P59 Viral Protein Immune System date May 29, 2019
title Crystal Structure Of Sivrcm Vif-Cbfbeta-Elob-Eloc Complex
authors J.M.Binning, N.M.Chesarino, M.Emerman, J.D.Gross
compound source
Molecule: Core-Binding Factor Subunit Beta
Chain: C, A
Synonym: Cbf-Beta,Polyomavirus Enhancer-Binding Protein 2 B Subunit,Pebp2-Beta,Sl3-3 Enhancer Factor 1 Subunit Beta,Sl3 Binding Factor Beta Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbfb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Elongin-B
Chain: W, D
Synonym: Elob,Elongin 18 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit B,Siii P18,Transcription Elongation Fac Polypeptide 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elob, Tceb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Elongin-C
Chain: Z, E
Synonym: Eloc,Elongin 15 Kda Subunit,Rna Polymerase II Tran Factor Siii Subunit C,Siii P15,Transcription Elongation Fac Polypeptide 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eloc, Tceb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Virion Infectivity Factor
Chain: F, B
Engineered: Yes
Organism_scientific: Simian Immunodeficiency Virus
Organism_common: Siv
Organism_taxid: 11723
Gene: Vif
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.220 112.489 125.697 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.94 Å
ligand GOL, MES, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


E, Z


F, B


W, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (388 Kb) [Save to disk]
  • Biological Unit Coordinates (6p59.pdb1.gz) 188 Kb
  • Biological Unit Coordinates (6p59.pdb2.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 6P59
  • CSU: Contacts of Structural Units for 6P59
  • Structure Factors (643 Kb)
  • Retrieve 6P59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6P59 from S2C, [Save to disk]
    • View 6P59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6P59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6p59_C] [6p59_D] [6p59_B] [6p59_F] [6p59_Z] [6p59_E] [6p59_A] [6p59_W]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6P59
  • Community annotation for 6P59 at PDBWiki (http://pdbwiki.org)

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