6PJJ Transferase Transferase Inhibitor date Jun 28, 2019
title Human Prpf4b Bound To Benzothiophene Inhibitor 224
authors P.H.C.Godoi, A.S.Santiago, A.M.Fala, P.Z.Ramos, D.Sriranganadane A.Mascarello, N.Segretti, H.Azevedo, C.R.W.Guimaraes, P.Arruda, J.M.Elkins, R.M.Counago, Structural Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Prp4 Homolog
Chain: A, B, C, D
Synonym: Prp4 Kinase,Prp4 Pre-Mrna-Processing Factor 4 Homo
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prpf4b, Kiaa0536, Prp4, Prp4h, Prp4k
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.190 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
241.812 241.812 50.230 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand EDO, OCJ, PO4, PTR enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (6pjj.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 6PJJ
  • CSU: Contacts of Structural Units for 6PJJ
  • Structure Factors (3697 Kb)
  • Retrieve 6PJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PJJ from S2C, [Save to disk]
    • View 6PJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6PJJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pjj_B] [6pjj_C] [6pjj_A] [6pjj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6PJJ
  • Community annotation for 6PJJ at PDBWiki (http://pdbwiki.org)

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