6PUY Viral Protein Dna date Jul 18, 2019
title Structure Of Hiv Cleaved Synaptic Complex (Csc) Intasome Bou Magnesium And Insti Xz426 (Compound 4d)
authors D.Lyumkis, I.K.Jozwik, D.Passos
compound source
Molecule: Chimeric Sso7d And Hiv-1 Integrase
Chain: A, B, C, D
Synonym: 7 Kda Dna-Binding Protein D,Sso7d
Engineered: Yes
Organism_scientific: Saccharolobus Solfataricus (Strain Atc Dsm 1617 Jcm 11322 P2), Human Immunodeficiency Virus 1;
Organism_taxid: 273057, 11676
Strain: Atcc 35092 Dsm 1617 Jcm 11322 P2
Gene: Sso7d, Sso7d-1, Sso10610
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Viral Dna Non-Transferred Strand
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676

Molecule: Viral Dna Transferred Strand
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 2.80 Å
ligand MG, OZ1, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • endoribonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (6puy.pdb1.gz) 233 Kb
  • LPC: Ligand-Protein Contacts for 6PUY
  • CSU: Contacts of Structural Units for 6PUY
  • Retrieve 6PUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PUY from S2C, [Save to disk]
  • View 6PUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PUY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6puy_A] [6puy_B] [6puy_C] [6puy_D] [6puy_E] [6puy_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PUY
  • Community annotation for 6PUY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science