6PWX Histone Binding Dna Binding Dna date Jul 23, 2019
title Cryo-Em Structure Of Rbbp5 Bound To The Nucleosome
authors S.H.Park, A.Ayoub, Y.T.Lee, J.Xu, W.Zhang, B.Zhang, Y.Zhang, M.A.Ci M.Su, Y.Dou, U.Cho
compound source
Molecule: Retinoblastoma-Binding Protein 5
Chain: A
Synonym: Rbbp-5,Retinoblastoma-Binding Protein Rbq-3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp5, Rbq3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3.2
Chain: G, K
Synonym: Histone H3
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: H, L
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: I, M
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: J, N
Synonym: H2b1.1
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (146-Mer)
Chain: O
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (146-Mer)
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


H, L


J, N


K, G


M, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (6pwx.pdb1.gz) 313 Kb
  • CSU: Contacts of Structural Units for 6PWX
  • Retrieve 6PWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PWX from S2C, [Save to disk]
  • View 6PWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PWX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6pwx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pwx_P] [6pwx_H] [6pwx_A] [6pwx_G] [6pwx_O] [6pwx_J] [6pwx_M] [6pwx_N] [6pwx_L] [6pwx_I] [6pwx_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PWX
  • Community annotation for 6PWX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science