6PY8 Dna Binding Protein Dna date Jul 29, 2019
title Crystal Structure Of The Rbpj-Notch1-Nrarp Ternary Complex B Dna
authors S.M.Jarrett, T.C.M.Seegar, S.C.Blacklow
compound source
Molecule: Notch-Regulated Ankyrin Repeat-Containing Protein
Chain: B, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrarp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna
Chain: A, X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna
Chain: D, Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Recombining Binding Protein Suppressor Of Hairles
Chain: C, E
Synonym: Cbf-1,J Kappa-Recombination Signal-Binding Protein Kappa,Rbp-Jk,Renal Carcinoma Antigen Ny-Ren-30;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbpj, Igkjrb, Igkjrb1, Rbpjk, Rbpsuh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: F, K
Synonym: Hn1,Translocation-Associated Notch Protein Tan-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1, Tan1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.267 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.880 103.650 301.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.75 Å
Gene
Ontology
ChainFunctionProcessComponent
C, E


G, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (6py8.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (6py8.pdb2.gz) 138 Kb
  • CSU: Contacts of Structural Units for 6PY8
  • Structure Factors (533 Kb)
  • Retrieve 6PY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PY8 from S2C, [Save to disk]
  • View 6PY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PY8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6py8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6py8_K] [6py8_B] [6py8_D] [6py8_H] [6py8_C] [6py8_G] [6py8_E] [6py8_F] [6py8_Y] [6py8_X] [6py8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PY8
  • Community annotation for 6PY8 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science