6Q2O Signaling Protein date Aug 08, 2019
title Cryo-Em Structure Of Retgfra2nrtn Extracellular Complex. T Refinement Was Applied With C2 Symmetry.
authors J.Li, G.J.Shang, Y.J.Chen, C.A.Brautigam, J.Liou, X.W.Zhang, X.C.B
compound source
Molecule: Neurturin
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nrtn
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Gdnf Family Receptor Alpha-2
Chain: C, D
Synonym: Gfr-Alpha-2,Gdnf Receptor Beta,Gdnfr-Beta,Neurturi Alpha,Ntnr-Alpha,Ret Ligand 2,Tgf-Beta-Related Neurotrophic Receptor 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gfra2, Gdnfrb, Retl2, Trnr2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Proto-Oncogene Tyrosine-Protein Kinase Receptor R
Chain: E, F
Synonym: Cadherin Family Member 12,Proto-Oncogene C-Ret
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ret, Cdhf12, Cdhr16, Ptc, Ret51
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.65 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (6q2o.pdb1.gz) 277 Kb
  • CSU: Contacts of Structural Units for 6Q2O
  • Retrieve 6Q2O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6Q2O from S2C, [Save to disk]
  • View 6Q2O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6Q2O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6q2o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6q2o_D] [6q2o_A] [6q2o_B] [6q2o_C] [6q2o_E] [6q2o_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6Q2O
  • Community annotation for 6Q2O at PDBWiki (http://pdbwiki.org)

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