6QBY Cytosolic Protein date Dec 24, 2018
title Crystal Structure Of Vash 2 In Complex With Svbp
authors S.R.Choi, V.Olieric, M.O.Steinmetz, N.Olieric
compound source
Molecule: Tubulinyl-Tyr Carboxypeptidase 2
Chain: A, C
Synonym: Vasohibin-2,Vasohibin-Like Protein
Ec: 3.4.17.17
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vash2, Vashl
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Small Vasohibin-Binding Protein
Chain: B, D
Synonym: Coiled Coil Domain-Containing Protein 23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Svbp, Ccdc23
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 31 2 1
R_factor 0.190 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.887 119.887 102.636 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.09 Å
ligand
enzyme Hydrolase E.C.3.4.17.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (6qby.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (6qby.pdb2.gz) 98 Kb
  • CSU: Contacts of Structural Units for 6QBY
  • Structure Factors (525 Kb)
  • Retrieve 6QBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QBY from S2C, [Save to disk]
    • View 6QBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6QBY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qby_B] [6qby_C] [6qby_A] [6qby_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6QBY
  • Community annotation for 6QBY at PDBWiki (http://pdbwiki.org)

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