6QNT Viral Protein date Feb 12, 2019
title Human Adenovirus Type 3 Fiber Knob In Complex With One Copy Desmoglein-2
authors G.Effantin
compound source
Molecule: Fiber Protein
Chain: A, B, C
Synonym: Spike,Protein Iv
Engineered: Yes
Organism_scientific: Human Adenovirus B Serotype 3
Organism_taxid: 45659
Gene: L5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Desmoglein-2
Chain: D
Synonym: Cadherin Family Member 5,Hdgc
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dsg2, Cdhf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


D


Primary referenceCryoEM structure of adenovirus type 3 fibre with desmoglein 2 shows an unusual mode of receptor engagement., Vassal-Stermann E, Effantin G, Zubieta C, Burmeister W, Iseni F, Wang H, Lieber A, Schoehn G, Fender P, Nat Commun. 2019 Mar 12;10(1):1181. doi: 10.1038/s41467-019-09220-y. PMID:30862836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (6qnt.pdb1.gz) 116 Kb
  • CSU: Contacts of Structural Units for 6QNT
  • Retrieve 6QNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QNT from S2C, [Save to disk]
  • View 6QNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QNT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6qnt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qnt_B] [6qnt_A] [6qnt_D] [6qnt_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QNT
  • Community annotation for 6QNT at PDBWiki (http://pdbwiki.org)

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