6RYU Transcription date Jun 12, 2019
title Nucleosome-Chd4 Complex Structure (Two Chd4 Copies)
authors L.Farnung, M.Ochmann, P.Cramer
compound source
Molecule: Histone H3.2
Chain: A, E
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a Type 1
Chain: C, G
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b 1.1
Chain: D, H
Synonym: H2b1.1
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (149-Mer)
Chain: I
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (149-Mer)
Chain: J
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Chromodomain-Helicase-Dna-Binding Protein 4,Chd4, Chromodomain-Helicase-Dna-Binding Protein 4;
Chain: W, V
Synonym: Chd-4,Atp-Dependent Helicase Chd4,Mi-2 Autoantigen Protein,Mi2-Beta,Chd-4,Atp-Dependent Helicase Chd4,Mi-2 Aut 218 Kda Protein,Mi2-Beta;
Ec: 3.6.4.12,3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chd4
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand ANP, MG, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]
  • Biological Unit Coordinates (6ryu.pdb1.gz) 424 Kb
  • LPC: Ligand-Protein Contacts for 6RYU
  • CSU: Contacts of Structural Units for 6RYU
  • Retrieve 6RYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RYU from S2C, [Save to disk]
    • View 6RYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6RYU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ryu_J] [6ryu_C] [6ryu_H] [6ryu_B] [6ryu_G] [6ryu_A] [6ryu_W] [6ryu_E] [6ryu_F] [6ryu_V] [6ryu_D] [6ryu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6RYU
  • Community annotation for 6RYU at PDBWiki (http://pdbwiki.org)

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