6S7O Transferase date Jul 05, 2019
title Cryo-Em Structure Of Human Oligosaccharyltransferase Complex
authors A.S.Ramirez, J.Kowal, K.P.Locher
compound source
Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit Stt3a;
Chain: A
Synonym: Stt3-A,B5,Integral Membrane Protein 1,Transmembran Tmc;
Ec: 2.4.99.18
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit 4;
Chain: B

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transmembrane Protein 258
Chain: C
Synonym: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit Tmem258,Oligosaccharyl Transfer Subunit Tmem258;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit Dad1;
Chain: D
Synonym: Oligosaccharyl Transferase Subunit Dad1,Defender A Cell Death 1,Dad-1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit 1;
Chain: E
Synonym: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase 67 Kda Subunit,Ribophorin I,Rpn-I,Ribop

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase Subunit 2;
Chain: F
Synonym: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase 63 Kda Subunit,Ribiir,Ribophorin II,Rpn Ribophorin-2;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase 48 Kda Subunit;
Chain: G
Synonym: Oligosaccharyl Transferase 48 Kda Subunit

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Oligosaccharyltransferase Complex Subunit Ostc
Chain: H
Synonym: Hydrophobic Protein Hsf-28
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ostc, Dc2, Hdcmd45p, Hspc307
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand
enzyme Transferase E.C.2.4.99.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D
  • enzyme activator activity

  • oligosaccharyltransferase co...
  • E


    F


    G


    H

  • oligosaccharyltransferase co...
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (6s7o.pdb1.gz) 323 Kb
  • CSU: Contacts of Structural Units for 6S7O
  • Retrieve 6S7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6S7O from S2C, [Save to disk]
  • View 6S7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6S7O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6s7o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6s7o_H] [6s7o_B] [6s7o_C] [6s7o_A] [6s7o_F] [6s7o_D] [6s7o_G] [6s7o_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6S7O
  • Community annotation for 6S7O at PDBWiki (http://pdbwiki.org)

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