6SIT	Viral Protein	date	Aug 11, 2019
title	Pseudo-Atomic Crystal Structure Of The Desmoglein 2 - Human Serotype 3 Fibre Knob Complex
authors	W.P.Burmeister, P.Fender, E.Vassal-Stermann
compound		source
Molecule: Fiber Protein Chain: A Synonym: Spike,Protein Iv Engineered: Yes		Organism_scientific: Human Adenovirus B3 Organism_taxid: 45659 Gene: L5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Plyss Expression_system_plasmid: Petduet-1
Molecule: Desmoglein-2 Chain: D Synonym: Cadherin Family Member 5,Hdgc Engineered: Yes Other_details: Extracellular Domain Ec2 And Ec3		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dsg2, Cdhf5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Plyss Expression_system_plasmid: Petm-40
symmetry	Space Group: I 21 3	R_factor 0.367 R_Free 0.370
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.530 146.530 146.530 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	4.50 Å
ligand	CA	enzyme	Transferase E.C.2 BRENDA
Gene Ontology	Chain Function Process Component A D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (6sit.pdb1.gz) 199 Kb LPC: Ligand-Protein Contacts for 6SIT CSU: Contacts of Structural Units for 6SIT Structure Factors (138 Kb) Retrieve 6SIT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6SIT from S2C, [Save to disk]

View 6SIT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6SIT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6sit_A] [6sit_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6SIT

Community annotation for 6SIT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---