6SXB Dna Binding Protein date Sep 25, 2019
title Xpf-Ercc1 Cryo-Em Structure, Dna-Bound Form
authors M.L.Jones, D.C.Briggs, N.Q.Mcdonald
compound source
Molecule: Dna Repair Endonuclease Xpf
Chain: F
Synonym: Dna Excision Repair Protein Ercc-4,Dna Repair Prot Complementing Xp-F Cells,Xeroderma Pigmentosum Group F-Comp Protein;
Ec: 3.1.-.-
Engineered: Yes
Other_details: Some Residues Have Been Modelled As Alanine Sidechains Were Not Visible.;
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc4, Ercc11, Xpf
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dna Excision Repair Protein Ercc-1
Chain: G
Engineered: Yes
Other_details: Some Residues Modelled As Alanine Where No S Information Available.;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Dna (5'-D(Pcpapgpaptpgpcptpgpa)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Tpcpapgpcpaptpcptpg)-3')
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.90 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F
  • telomerase inhibitor activit...


    • G


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (6sxb.pdb1.gz) 135 Kb
  • CSU: Contacts of Structural Units for 6SXB
  • Retrieve 6SXB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SXB from S2C, [Save to disk]
    • View 6SXB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6SXB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sxb_F] [6sxb_G] [6sxb_C] [6sxb_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6SXB
  • Community annotation for 6SXB at PDBWiki (http://pdbwiki.org)

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