6T1F Dna Binding Protein date Oct 04, 2019
title Crystal Structure Of The C-Terminally Truncated Chromosome- Partitioning Protein Parb From Caulobacter Crescentus Compl The Centromeric Pars Site
authors A.S.B.Jalal, C.L.Pastrana, N.T.Tran, C.E.M.Stevenson, D.M.Lawson F.Moreno-Herrero, T.B.K.Le
compound source
Molecule: Chromosome-Partitioning Protein Parb
Chain: A, B, C, D
Engineered: Yes
Other_details: The Expressed Protein Comprised Residues 11- Wild-Type Sequence With A C-Terminal Nickel Affinity Tag Of Klaaalehhhhhh From The Pet21b Expression Plasmid;
Organism_scientific: Caulobacter Vibrioides (Strain Na1000
Organism_taxid: 565050
Strain: Na1000 Cb15n
Gene: Parb, Ccna_03868
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Rosetta
Expression_system_variant: Solu
Expression_system_plasmid: Pet21b

Molecule: Dna (5'- D(Gpgpaptpgptptptpcpapcpgptpgpapapapcpap 3');
Chain: E, F, G, H
Engineered: Yes
Other_details: Palindromic Dna Sequence Similar To The Pars From Caulobacter Vibriodes Without 5' Phosphates.

Synthetic: Yes
Organism_scientific: Caulobacter Vibrioides
Organism_taxid: 155892
symmetry Space Group: P 1 21 1
R_factor 0.240 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.250 172.928 72.852 90.00 90.54 90.00
method X-Ray Diffractionresolution 2.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (6t1f.pdb1.gz) 150 Kb
  • Biological Unit Coordinates (6t1f.pdb2.gz) 150 Kb
  • CSU: Contacts of Structural Units for 6T1F
  • Structure Factors (1228 Kb)
  • Retrieve 6T1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6T1F from S2C, [Save to disk]
  • View 6T1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6T1F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6t1f_H] [6t1f_C] [6t1f_A] [6t1f_B] [6t1f_E] [6t1f_F] [6t1f_G] [6t1f_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6T1F
  • Community annotation for 6T1F at PDBWiki (http://pdbwiki.org)

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