OCA Atlas for 6T8O

6T8O

Stalled FtsK motor domain bound to dsDNA end

date

authors

Jean, N.L., Lowe, J.

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

3.99

ligand

ADP

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, A, D, C, E, B

Primary reference

FtsK in motion reveals its mechanism for double-stranded DNA translocation., Jean NL, Rutherford TJ, Lowe J, Proc Natl Acad Sci U S A. 2020 Jun 23;117(25):14202-14208. doi:, 10.1073/pnas.2001324117. Epub 2020 Jun 8. PMID:32513722

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]

Biological Unit Coordinates (6t8o.pdb1.gz) 338 Kb

LPC: Ligand-Protein Contacts for 6T8O

CSU: Contacts of Structural Units for 6T8O

Retrieve 6T8O in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6T8O from S2C, [Save to disk]

View 6T8O in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6T8O

Cartoon representation from PDB Cartoon

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Crystal Contacts, from CryCo at Weizmann Institute

Fold representative 6t8o from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6t8o_E] [6t8o_H] [6t8o_A] [6t8o_D] [6t8o_G] [6t8o_B] [6t8o_F] [6t8o_C]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6T8O

Community annotation for 6T8O at PDBWiki (http://pdbwiki.org)

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