6TB4 Transcription date Oct 31, 2019
title Structure Of Saga Bound To Tbp
authors G.Papai, A.Frechard, O.Kolesnikova, C.Crucifix, P.Schultz, A.Ben-
compound source
Molecule: Tata-Box Binding Protein (Tbp)
Chain: M
Engineered: Yes
 Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril

Molecule: Transcriptional Coactivator Hfi1ada1
Chain: A
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Saga-Associated Factor 73 (Sgf73)
Chain: C
Organism_scientific: Komagataella Phaffii Gs115
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Spt20
Chain: F
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit Of The Saga And Saga-Like Transcriptional Regulatory Complexes, Interacts With Spt15p To Act;
Chain: D
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit Of The Saga Transcriptional Regulatory Co Involved In Proper Assembly Of The Complex;
Chain: E
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: J
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (6168 Kda) Of Tfiid And Saga Complexes
Chain: K
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (90 Kda) Of Tfiid And Saga Complexes
Chain: G
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (60 Kda) Of Tfiid And Saga Complexes
Chain: H
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Subunit (17 Kda) Of Tfiid And Saga Complexes, Inv Rna Polymerase II Transcription Initiation;
Chain: I
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcription-Associated Protein
Chain: L
Organism_scientific: Komagataella Phaffii (Strain Gs115 A 20864);
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864

Molecule: Transcriptional Adapter 3 (Ada3)
Chain: B
Organism_scientific: Komagataella Phaffii Gs115
Organism_common: Yeast
Organism_taxid: 644223
Strain: Gs115 Atcc 20864
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


C


D


E


F
  • transcription cofactor activ...


    • G


    H


    I


    J


    K


    L


    M


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (772 Kb) [Save to disk]
  • Biological Unit Coordinates (6tb4.pdb1.gz) 734 Kb
  • CSU: Contacts of Structural Units for 6TB4
  • Retrieve 6TB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TB4 from S2C, [Save to disk]
    • View 6TB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6TB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tb4_L] [6tb4_D] [6tb4_A] [6tb4_G] [6tb4_C] [6tb4_F] [6tb4_B] [6tb4_K] [6tb4_H] [6tb4_E] [6tb4_I] [6tb4_J] [6tb4_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6TB4
  • Community annotation for 6TB4 at PDBWiki (http://pdbwiki.org)

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