6U8Z Hydrolase date Sep 06, 2019
title Crystal Structure Of Catalytic Domain Of Human Phospholipase
authors F.Z.Bowling, M.V.Airola
compound source
Molecule: Phospholipase D1,Phospholipase D1
Chain: A
Fragment: Unp Residues 330-500,643-1074
Synonym: Hpld1, Choline Phosphatase 1, Phosphatidylcholine- Hydrolyzing Phospholipase D1;
Ec: 3.1.4.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pld1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac Htb
symmetry Space Group: P 41 21 2
R_factor 0.174 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.209 75.209 239.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand PO3 enzyme Hydrolase E.C.3.1.4.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (6u8z.pdb1.gz) 314 Kb
  • LPC: Ligand-Protein Contacts for 6U8Z
  • CSU: Contacts of Structural Units for 6U8Z
  • Structure Factors (6687 Kb)
  • Retrieve 6U8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U8Z from S2C, [Save to disk]
  • View 6U8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U8Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u8z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U8Z
  • Community annotation for 6U8Z at PDBWiki (http://pdbwiki.org)

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