6UH5 Transferase Structural Protein Dna date Sep 26, 2019
title Structural Basis Of Compass Ecm Recognition Of The H2bub Nuc
authors P.L.Hsu, H.Shi, N.Zheng
compound source
Molecule: Histone H3
Chain: A, E
Engineered: Yes
 Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h3g, H3l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Hist1h2aj, Loc494591, Xelaev_18003602mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18032686mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: H
Engineered: Yes
Mutation: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xelaev_18032686mg
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (146-Mer)
Chain: I
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (146-Mer)
Chain: J
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Swd3
Chain: K
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_e24487g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-4 S
Chain: M
Synonym: Compass Component Set1,Set Domain-Containing Prote
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Set1, Klla0f24134g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Swd1
Chain: N
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_a08800g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Ubiquitin
Chain: Q
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: H3 N-Terminus
Chain: R
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Spp1
Chain: X
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_d07260g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Bre2
Chain: L
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_c10945g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Sdc1
Chain: O, P
Engineered: Yes
Organism_scientific: Kluyveromyces Lactis (Strain Atcc 8585 2359 Dsm 70799 Nbrc 1267 Nrrl Y-1140 Wm37);
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_e03521g
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand SAM, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K
  • chromatin silencing at telom...

    • L
  • chromatin silencing at telom...

    • N
  • chromatin silencing at telom...

    • O, P


    X
  • chromatin silencing at telom...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (449 Kb) [Save to disk]
  • Biological Unit Coordinates (6uh5.pdb1.gz) 438 Kb
  • LPC: Ligand-Protein Contacts for 6UH5
  • CSU: Contacts of Structural Units for 6UH5
  • Retrieve 6UH5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UH5 from S2C, [Save to disk]
    • View 6UH5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6UH5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uh5_B] [6uh5_N] [6uh5_Q] [6uh5_K] [6uh5_J] [6uh5_A] [6uh5_C] [6uh5_D] [6uh5_E] [6uh5_F] [6uh5_R] [6uh5_H] [6uh5_P] [6uh5_G] [6uh5_I] [6uh5_O] [6uh5_M] [6uh5_L] [6uh5_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6UH5
  • Community annotation for 6UH5 at PDBWiki (http://pdbwiki.org)

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