6UHC Contractile Protein date Sep 27, 2019
title Cryoem Structure Of Human Arp23 Complex With Bound Npfs
authors A.Zimmet, T.Van Eeuwen, R.Dominguez
compound source
Molecule: Actin-Related Protein 3
Chain: A
Synonym: Actin-Like Protein 3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actr3, Arp3
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 2
Chain: B
Synonym: Actin-Like Protein 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actr2, Arp2
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 23 Complex Subunit 1b
Chain: C
Synonym: Arp23 Complex 41 Kda Subunit,P41-Arc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arpc1b, Arc41
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 23 Complex Subunit 2
Chain: D
Synonym: Arp23 Complex 34 Kda Subunit,P34-Arc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arpc2, Arc34, Pro2446
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 23 Complex Subunit 3
Chain: E
Synonym: Arp23 Complex 21 Kda Subunit,P21-Arc
Engineered: Yes
Other_details: C-Terminal Flag Tag
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arpc3, Arc21
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 23 Complex Subunit 4
Chain: F
Synonym: Arp23 Complex 20 Kda Subunit,P20-Arc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arpc4, Arc20
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Actin-Related Protein 23 Complex Subunit 5
Chain: G
Synonym: Arp23 Complex 16 Kda Subunit,P16-Arc
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arpc5, Arc16
Expression_system: Spodoptera Aff. Frugiperda 1 Bold-2017
Expression_system_taxid: 2449148
Expression_system_cell_line: Sf9
Expression_system_cell: Suspension
Expression_system_plasmid: Pbig2abc

Molecule: Neural Wiskott-Aldrich Syndrome Protein
Chain: H, I
Synonym: N-Wasp
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Wasl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H, I
  • actin nucleation

    • Primary referenceCryo-EM structure of NPF-bound human Arp2/3 complex and activation mechanism., Zimmet A, Van Eeuwen T, Boczkowska M, Rebowski G, Murakami K, Dominguez R, Sci Adv. 2020 Jun 5;6(23):eaaz7651. doi: 10.1126/sciadv.aaz7651. eCollection 2020, Jun. PMID:32548263
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (6uhc.pdb1.gz) 294 Kb
  • LPC: Ligand-Protein Contacts for 6UHC
  • CSU: Contacts of Structural Units for 6UHC
  • Retrieve 6UHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6UHC from S2C, [Save to disk]
    • View 6UHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6UHC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6uhc_C] [6uhc_A] [6uhc_F] [6uhc_E] [6uhc_B] [6uhc_D] [6uhc_G] [6uhc_H] [6uhc_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6UHC
  • Community annotation for 6UHC at PDBWiki (http://pdbwiki.org)

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